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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3629033_3646241_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3629033 - 3646241
Intron Length:
17209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TCGCCCTGACCT
Flanking Amino Acid:
LVAKIKASKSKLLGSAKRLN
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
52.8
0.17
1.8
70.2
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028233
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037157
3618879 - 3646962
28084
ENSAPLT00000034453
3618003 - 3646962
28960