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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3661569_3664681_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3661569 - 3664681
Intron Length:
3113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
GTTGCACTGATG
Flanking Amino Acid:
FSAPEARNGSVAEKPAPYTN
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
44.3
-0.5
2
53.23
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001391
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001381
3661511 - 3665730
4220