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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3697108_3697704_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3697108 - 3697704
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TTAACCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TAATCTTTAACC
Flanking Amino Acid:
RWLAEERVERLGNLVKAEWK
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
55.7
43.1
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
75.1
0.56
0.9
68.7
36.9
Minor 5ss
32
-2.1
2.9
43.7
43.2
Minor BPS
80.6
0.94
1
80.63
33.4

Associated Gene:

Gene:
TSEN54
Ensembl Gene ID:
ENSAPLG00000009419
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021911
3696691 - 3704924
8234
ENSAPLT00000009822
3692044 - 3704924
12881
ENSAPLT00000043790
3696303 - 3704924
8622
ENSAPLT00000032139
3692044 - 3704924
12881