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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3697769_3697912_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3697769 - 3697912
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAC
U12 Branch Point Sequence:
AAGCCCATCACG
Flanking Amino Acid:
KGIVELQSPAGKFWHTMGFS
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.1
43.2
Major BPS
53.4
0.09
1.1
57.3
37.7
Major PPT
77.9
0.63
0.9
68.7
42
Minor 5ss
32.9
-2
3
42.1
44.4
Minor BPS
45
-0.5
2.1
49.75
43.5

Associated Gene:

Gene:
TSEN54
Ensembl Gene ID:
ENSAPLG00000009419
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021911
3696691 - 3704924
8234
ENSAPLT00000009822
3692044 - 3704924
12881
ENSAPLT00000043790
3696303 - 3704924
8622
ENSAPLT00000032139
3692044 - 3704924
12881
ENSAPLT00000030751
3697159 - 3700645
3487