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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3697997_3699786_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3697997 - 3699786
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTGTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
GGTTCTCTAAAT
Flanking Amino Acid:
PEEALYLLECGSVQLFYRNL
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
87
0.83
0.7
81.7
30.4
Minor 5ss
37.1
-1.5
2.8
43.2
43.8
Minor BPS
57.9
0.33
1.8
75.96
40

Associated Gene:

Gene:
TSEN54
Ensembl Gene ID:
ENSAPLG00000009419
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032139
3692044 - 3704924
12881
ENSAPLT00000030751
3697159 - 3700645
3487
ENSAPLT00000021911
3696691 - 3704924
8234
ENSAPLT00000009822
3692044 - 3704924
12881
ENSAPLT00000043790
3696303 - 3704924
8622