Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3699886_3700492_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3699886 - 3700492

Intron Length:

607

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTTGG

5'SS Class:

strong_major

3'SS Sequence:

AGCAGAAGGGTAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCAGAA

U12 Branch Point Sequence:

TGCTGCTGTATT

Flanking Amino Acid:

QEEMSLSHYQFCYPALLSAS

Intron Amino Acid Position:

150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

0.9

67.5

40.3

Major BPS

46.4

-0.2

38.4

32.3

Major PPT

44.6

-0.3

1.1

29.3

35.6

Minor 5ss

40.2

-1.1

2.7

49.2

47.1

Minor BPS

45.7

-0.2

2.2

65.21

45.3

Associated Gene:

Gene:

TSEN54

Ensembl Gene ID:

ENSAPLG00000009419

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009822

3692044 - 3704924

12881

ENSAPLT00000043790

3696303 - 3704924

8622

ENSAPLT00000030751

3697159 - 3700645

3487

ENSAPLT00000021911

3696691 - 3704924

8234