About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3700190_3701746_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3700190 - 3701746
Intron Length:
1557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCAGC
5'SS Class:
major
3'SS Sequence:
CTTCTGTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTGTCTTTTATG
Flanking Amino Acid:
LGYIVLRFNPRSLEKKHKVS
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
67.1
44.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
74.7
0.56
0.8
73.1
31.8
Minor 5ss
45.3
-0.5
2.7
61.2
43.3
Minor BPS
54.7
0
1.7
58.31
44.2

Associated Gene:

Gene:
TSEN54
Ensembl Gene ID:
ENSAPLG00000009419
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032139
3692044 - 3704924
12881