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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3700642_3701746_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3700642 - 3701746
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTGTCTTTTATG
Flanking Amino Acid:
ERKRRRSSSPGSLEKKHKVS
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
73.4
43.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
74.7
0.56
0.8
73.1
31.8
Minor 5ss
35.4
-1.7
3.2
40.5
45.5
Minor BPS
54.7
0
1.7
58.31
44.2

Associated Gene:

Gene:
TSEN54
Ensembl Gene ID:
ENSAPLG00000009419
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009822
3692044 - 3704924
12881