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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3702382_3702924_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3702382 - 3702924
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGGCT
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
CTGGTCTGATCC
Flanking Amino Acid:
LLRPEEATSTAAILQQISVL
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
64.4
38.9
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
86.2
0.81
0.7
78
30.8
Minor 5ss
30.5
-2.2
3.8
47.6
48
Minor BPS
46.1
-0.3
1.8
54.04
44.2

Associated Gene:

Gene:
TSEN54
Ensembl Gene ID:
ENSAPLG00000009419
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009822
3692044 - 3704924
12881
ENSAPLT00000043790
3696303 - 3704924
8622
ENSAPLT00000032139
3692044 - 3704924
12881
ENSAPLT00000021911
3696691 - 3704924
8234