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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3703695_3704764_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3703695 - 3704764
Intron Length:
1070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
AATATATAAACA
Flanking Amino Acid:
GKPYVRMCVQSFEEQIPSLR
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.4
41.9
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
82
0.72
0.7
77.2
24.7
Minor 5ss
49.1
-0.1
2.5
65.5
45.8
Minor BPS
47.8
-0.1
1.9
60.77
38.7

Associated Gene:

Gene:
TSEN54
Ensembl Gene ID:
ENSAPLG00000009419
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032139
3692044 - 3704924
12881
ENSAPLT00000021911
3696691 - 3704924
8234
ENSAPLT00000009822
3692044 - 3704924
12881
ENSAPLT00000043790
3696303 - 3704924
8622