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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3715527_3721847_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3715527 - 3721847
Intron Length:
6321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
TTCTCTCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGATCATGACT
Flanking Amino Acid:
LKRDLFQFNKTVEHGFPHQP
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.3
0.55
0.9
69.7
36.7
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
56.9
0.3
1.7
76.49
40.1

Associated Gene:

Gene:
LLGL2
Ensembl Gene ID:
ENSAPLG00000009521
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010037
3715452 - 3739565
24114