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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3721946_3722938_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
3721946 - 3722938
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACAAACCCTTCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AGATCCTCAACA
Flanking Amino Acid:
AIGTRSGAIKLYGAPGVEFM
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
62.2
0.28
1
55.8
40
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
67.7
0.55
1.5
72.52
38.6

Associated Gene:

Gene:
LLGL2
Ensembl Gene ID:
ENSAPLG00000009521
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010037
3715452 - 3739565
24114