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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3724399_3725020_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3724399 - 3725020
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACCTGC
5'SS Class:
weak_major
3'SS Sequence:
TCTGCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GGTTAACTAACT
Flanking Amino Acid:
EHRFTLKGPPGSPPSATQIT
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.36
1.3
55
45.3
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
71.5
0.49
0.9
62.2
38.8
Minor 5ss
49.3
-0
2.6
59.3
45.5
Minor BPS
48.9
-0
2.1
73.41
42.1

Associated Gene:

Gene:
LLGL2
Ensembl Gene ID:
ENSAPLG00000009521
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010037
3715452 - 3739565
24114