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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3725180_3725981_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3725180 - 3725981
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGTACCTGGAAT
Flanking Amino Acid:
RTITSEAVLQRVPEDYCNRR
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
76.8
0.6
0.8
72.7
32
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
56
0.27
1.7
75.29
40.7

Associated Gene:

Gene:
LLGL2
Ensembl Gene ID:
ENSAPLG00000009521
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010037
3715452 - 3739565
24114