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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3726145_3726272_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3726145 - 3726272
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAGCT
5'SS Class:
major
3'SS Sequence:
TCCTCCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTAACTAAGA
Flanking Amino Acid:
KVTHHFLGSQQLENLYWQRD
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
67.1
36.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
83.1
0.74
0.7
80.6
24.7
Minor 5ss
39.2
-1.2
3.4
57.4
46.8
Minor BPS
44.6
-0.4
2.3
62.3
43.4

Associated Gene:

Gene:
LLGL2
Ensembl Gene ID:
ENSAPLG00000009521
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010037
3715452 - 3739565
24114