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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3727588_3730877_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3727588 - 3730877
Intron Length:
3290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTAGCATTAATG
Flanking Amino Acid:
FIIFSSEPTAEFDDPSAMVV
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
59.3
0.16
1.8
65.41
42.5

Associated Gene:

Gene:
LLGL2
Ensembl Gene ID:
ENSAPLG00000009521
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010037
3715452 - 3739565
24114