Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3737800_3739421_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3737800 - 3739421

Intron Length:

1622

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TCT|GCAAGAAAA

5'SS Class:

major

3'SS Sequence:

GCAGGTTTTAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATGTTAT

U12 Branch Point Sequence:

CAGGTTTTAGAG

Flanking Amino Acid:

VHTRSGMENSAVLPGTGMCS

Intron Amino Acid Position:

956

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.5

0.25

1.5

61.2

39.2

Major BPS

72.5

0.56

1.2

63.4

Major PPT

48.7

-0

1.7

52.6

45.8

Minor 5ss

25.4

-2.8

3.9

41.3

44.8

Minor BPS

41.4

-0.7

1.7

36.43

39.8

Associated Gene:

Gene:

LLGL2

Ensembl Gene ID:

ENSAPLG00000009521

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010037

3715452 - 3739565

24114