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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3769820_3769909_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3769820 - 3769909
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTACGATGA
5'SS Class:
major
3'SS Sequence:
TTACTCAGGTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
CTTCACTTACTC
Flanking Amino Acid:
DLLPSFVIPLT
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
61.8
39.5
Major BPS
68.7
0.46
1
71.3
34
Major PPT
46.5
-0.2
1.8
55.2
44.4
Minor 5ss
38.7
-1.3
3.3
51.1
45.8
Minor BPS
51.6
0.03
1.8
64.53
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010900
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011346
3769817 - 3797236
27420