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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3769952_3770084_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3769952 - 3770084
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATCTCCTTTACA
Flanking Amino Acid:
FVIPLTGWFMATDHTFLQKC
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.1
60.2
44.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
82.8
0.74
0.8
76.3
31.6
Minor 5ss
19.9
-3.5
3.8
26.2
38
Minor BPS
72
0.68
1.6
77.79
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010900
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011346
3769817 - 3797236
27420