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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3772011_3772688_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3772011 - 3772688
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTCAGCACA
5'SS Class:
weak_major
3'SS Sequence:
TTGCCTCTTGGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGGTATTGATT
Flanking Amino Acid:
SQATQSLDELKLAAFVMGQR
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.6
0.13
1.4
57.2
41.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
60.4
0.24
1.7
69.4
36.8
Minor 5ss
37.7
-1.4
2.8
48
41.5
Minor BPS
51.3
0.12
1.7
70.98
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010900
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011346
3769817 - 3797236
27420