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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3777448_3778516_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3777448 - 3778516
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
CGTTCTGTGATT
Flanking Amino Acid:
ELAALLQVAEGQYRAQANQI
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
50.7
0.1
2
70.84
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010900
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027804
3777387 - 3799805
22419