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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3778648_3778751_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3778648 - 3778751
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATGTTTCTATCC
Flanking Amino Acid:
FSSFIKSHFQNTDFPAPGHP
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
47.7
-0.1
1.9
60.55
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010900
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027804
3777387 - 3799805
22419
ENSAPLT00000011346
3769817 - 3797236
27420