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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3780771_3781397_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3780771 - 3781397
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTTGT
5'SS Class:
major
3'SS Sequence:
TTTTATGTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATGT
Flanking Amino Acid:
KMVLDVHTFNEEKFSAEVES
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
71.5
41.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
71.2
0.48
1.1
66.1
45
Minor 5ss
47.6
-0.2
2.6
64.6
41.8
Minor BPS
50.6
0.1
2
74.38
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010900
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011346
3769817 - 3797236
27420