Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3785239_3786628_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3785239 - 3786628

Intron Length:

1390

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCTCCAGAA

5'SS Class:

weak_major

3'SS Sequence:

TTAGTGTTTAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TGTGCTTTTATT

Flanking Amino Acid:

SATPPPPAPKLLLPIAPAPP

Intron Amino Acid Position:

643

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.3

0.2

1.4

48.2

44.9

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

67.5

0.4

1.2

42.9

Minor 5ss

20.2

-3.4

3.9

30.1

Minor BPS

58.9

0.36

1.7

76.14

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010900

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027804

3777387 - 3799805

22419

ENSAPLT00000011346

3769817 - 3797236

27420