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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3791615_3791745_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3791615 - 3791745
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCAGA
5'SS Class:
major
3'SS Sequence:
GCTGTTTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
TCTGGCAGAAGC
Flanking Amino Acid:
PEHLKILCSYSFADVLSVEL
Intron Amino Acid Position:
961

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.3
68.9
43.8
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
78.7
0.65
0.9
76.2
37.8
Minor 5ss
34.2
-1.8
2.7
40.9
44.9
Minor BPS
39.4
-0.8
2.3
51.55
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010900
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011346
3769817 - 3797236
27420