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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3794799_3796079_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3794799 - 3796079
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAGAATAA
5'SS Class:
weak_major
3'SS Sequence:
TTTCCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
GATGCTTCACCC
Flanking Amino Acid:
THHGMAVSVSLARAVLLLST
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.6
0.04
1.1
51.5
35.9
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
86.5
0.82
0.7
81.3
23.7
Minor 5ss
38.1
-1.3
3.5
55.5
48.8
Minor BPS
46.6
-0.2
1.9
56.28
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010900
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011427
3794672 - 3799805
5134