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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3799459_3799745_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3799459 - 3799745
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTGTTTTGACA
Flanking Amino Acid:
PKSLWLELPQAKEMYHTVVV
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
75.9
0.58
1
72.2
42.7
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
62.5
0.39
1.4
69.98
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010900
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027804
3777387 - 3799805
22419
ENSAPLT00000011427
3794672 - 3799805
5134