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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3802908_3803021_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3802908 - 3803021
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
ATCATCTCAAAG
Flanking Amino Acid:
TEDQNPARKTVKEEAQRLIK
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
82.9
0.74
0.8
76.8
31.8
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
47.7
-0.3
1.7
51.87
42.3

Associated Gene:

Gene:
RECQL5
Ensembl Gene ID:
ENSAPLG00000011106
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011606
3802807 - 3843773
40967