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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3805486_3805821_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3805486 - 3805821
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CATACCCTATTT
Flanking Amino Acid:
NFLPASQVYSFKPKRVGAGF
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.9
0.72
0.6
81.4
23.7
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
48
-0
2
66.68
43.9

Associated Gene:

Gene:
RECQL5
Ensembl Gene ID:
ENSAPLG00000011106
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011606
3802807 - 3843773
40967