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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3805963_3806442_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3805963 - 3806442
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCCC
5'SS Class:
major
3'SS Sequence:
GTTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTAGTCACCA
Flanking Amino Acid:
NSYKASVLKKVAEINKASKG
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
64.9
37.8
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
87.2
0.84
0.7
84.7
30.2
Minor 5ss
30.6
-2.2
3.5
42.1
44.9
Minor BPS
45
-0.3
2.5
68.54
43.7

Associated Gene:

Gene:
RECQL5
Ensembl Gene ID:
ENSAPLG00000011106
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011606
3802807 - 3843773
40967