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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3807276_3808599_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3807276 - 3808599
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTTTGTGTA
5'SS Class:
weak_major
3'SS Sequence:
TCTGCTATGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTTTCAAAC
Flanking Amino Acid:
YKKQMSLRKVSADCPLKDAS
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.2
0.17
1.2
59.9
39
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
65.6
0.35
1
61.8
38.8
Minor 5ss
40
-1.1
3
46.6
43
Minor BPS
56
0.17
1.6
67.06
38.8

Associated Gene:

Gene:
RECQL5
Ensembl Gene ID:
ENSAPLG00000011106
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011606
3802807 - 3843773
40967