About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3822232_3824216_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3822232 - 3824216
Intron Length:
1985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAA
U12 Branch Point Sequence:
GTGTCATGAAGC
Flanking Amino Acid:
VSFCVVLLFIVTVLLLMIIA
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.5
29.7
Major BPS
62.9
0.32
1.1
53.9
41.5
Major PPT
89.9
0.9
0.6
88.1
21.8
Minor 5ss
38.8
-1.3
2.9
49.9
46.4
Minor BPS
48.2
-0.1
2
61.45
43.3

Associated Gene:

Gene:
SMIM5
Ensembl Gene ID:
ENSAPLG00000020078
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019271
3822105 - 3824338
2234