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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3832228_3832613_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3832228 - 3832613
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAGACTATAATT
Flanking Amino Acid:
LIKKELSNIQEKKGTLKESD
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.5
0.71
0.8
78
35.4
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
50.8
0.1
1.6
65.29
39.3

Associated Gene:

Gene:
RECQL5
Ensembl Gene ID:
ENSAPLG00000011106
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011606
3802807 - 3843773
40967