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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3840568_3840753_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3840568 - 3840753
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCGGCGAGG
5'SS Class:
weak_major
3'SS Sequence:
CCCCCCCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCCTTTTTT
Flanking Amino Acid:
PESDSEAGPAGEKGGLVSVG
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52
0.05
1.3
47
41.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.7
0.49
0.7
68.1
25.4
Minor 5ss
19.6
-3.5
3.9
21
37.7
Minor BPS
44.2
-0.3
3.6
79.54
43

Associated Gene:

Gene:
SAP30BP
Ensembl Gene ID:
ENSAPLG00000011643
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012147
3840477 - 3870847
30371