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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3867820_3868287_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3867820 - 3868287
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTTTAAGTAATT
Flanking Amino Acid:
IQRKKEFRNPSIYEKLIQFC
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.5
32.2
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
38.7
-1.3
3
49.2
47.3
Minor BPS
50.9
0.11
2.4
82.17
39.2

Associated Gene:

Gene:
SAP30BP
Ensembl Gene ID:
ENSAPLG00000011643
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012147
3840477 - 3870847
30371