Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3883562_3884085_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3883562 - 3884085

Intron Length:

524

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGACCT

5'SS Class:

strong_major

3'SS Sequence:

CGCCCCATTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCGTAAC

U12 Branch Point Sequence:

GTGCTCGTAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.8

74.2

36.1

Major BPS

61.9

0.3

1.2

63.6

40.3

Major PPT

69.4

0.44

0.9

61.7

33.4

Minor 5ss

29.2

-2.4

3.1

45.5

Minor BPS

51.6

0.05

65.03

41.3

Associated Gene:

Gene:

ITGB4

Ensembl Gene ID:

ENSAPLG00000011722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038616

3883119 - 3903644

20526

ENSAPLT00000019403

3883119 - 3903161

20043