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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3884620_3885072_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3884620 - 3885072
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
ATCTCCTTACTC
Flanking Amino Acid:
DNLKSMGHNLAEFLQDLTSN
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
73.5
0.53
0.8
64.5
30.9
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
66.7
0.5
1.6
72.28
39.5

Associated Gene:

Gene:
ITGB4
Ensembl Gene ID:
ENSAPLG00000011722
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038616
3883119 - 3903644
20526
ENSAPLT00000019403
3883119 - 3903161
20043
ENSAPLT00000012353
3884466 - 3903161
18696