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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3886241_3886911_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3886241 - 3886911
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
CGTGCCCCACTG
Flanking Amino Acid:
VTNHSYSYYEKLHKYFPISA
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
38.3
-1
2
40.59
43.9

Associated Gene:

Gene:
ITGB4
Ensembl Gene ID:
ENSAPLG00000011722
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038616
3883119 - 3903644
20526
ENSAPLT00000019403
3883119 - 3903161
20043
ENSAPLT00000012353
3884466 - 3903161
18696