About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3887263_3887347_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3887263 - 3887347
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
CCCTTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGCAC
U12 Branch Point Sequence:
GGCTCCTGCACC
Flanking Amino Acid:
GSFNITRGEVGKFKMRVKAL
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.6
Major BPS
46.1
-0.2
1.4
54.6
40.8
Major PPT
79
0.65
0.7
72.8
25.4
Minor 5ss
31.7
-2.1
3.3
37.8
42.2
Minor BPS
49.9
-0
2
60.92
43.8

Associated Gene:

Gene:
ITGB4
Ensembl Gene ID:
ENSAPLG00000011722
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038616
3883119 - 3903644
20526
ENSAPLT00000019403
3883119 - 3903161
20043
ENSAPLT00000012353
3884466 - 3903161
18696