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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3888664_3888802_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3888664 - 3888802
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTACGTCCT
5'SS Class:
major
3'SS Sequence:
CTCTGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
CAGCCACCAACT
Flanking Amino Acid:
SNDTCIDSRGGICNNQGRCE
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
66.5
44.9
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
73.8
0.54
0.8
65
36.4
Minor 5ss
35.3
-1.7
3.1
42.7
44
Minor BPS
42.2
-0.5
2
57.4
44.3

Associated Gene:

Gene:
ITGB4
Ensembl Gene ID:
ENSAPLG00000011722
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019403
3883119 - 3903161
20043
ENSAPLT00000012353
3884466 - 3903161
18696
ENSAPLT00000038616
3883119 - 3903644
20526