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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3890850_3891035_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3890850 - 3891035
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
AGAAACCTGACT
Flanking Amino Acid:
HTATANPKDLIPYGLSLRLT
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.8
34.9
Major BPS
60.1
0.25
1
51
35.6
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
34
-1.8
3.4
49.1
41.3
Minor BPS
46.1
-0.2
1.9
62.29
40.6

Associated Gene:

Gene:
ITGB4
Ensembl Gene ID:
ENSAPLG00000011722
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038616
3883119 - 3903644
20526
ENSAPLT00000019403
3883119 - 3903161
20043
ENSAPLT00000012353
3884466 - 3903161
18696