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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3891476_3891805_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3891476 - 3891805
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
GCHKLQQTKFRVQPNSGKRQ
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.4
38.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.9
0.76
0.7
81.9
22.9
Minor 5ss
27.7
-2.6
3
34.2
42
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
ITGB4
Ensembl Gene ID:
ENSAPLG00000011722
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012353
3884466 - 3903161
18696
ENSAPLT00000038616
3883119 - 3903644
20526
ENSAPLT00000019403
3883119 - 3903161
20043