Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3892141_3892220_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3892141 - 3892220

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGAGC

5'SS Class:

major

3'SS Sequence:

CCCTTTCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CATTTCCCACCT

Flanking Amino Acid:

PGYYTVTSDQDAHGMVEFQE

Intron Amino Acid Position:

829

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

38.8

Major BPS

72.7

0.56

30.1

Major PPT

76.5

0.6

0.7

68.6

31.9

Minor 5ss

31.2

-2.1

3.4

42.5

44.6

Minor BPS

45.2

-0.2

2.1

65.62

44.7

Associated Gene:

Gene:

ITGB4

Ensembl Gene ID:

ENSAPLG00000011722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038616

3883119 - 3903644

20526

ENSAPLT00000019403

3883119 - 3903161

20043

ENSAPLT00000012353

3884466 - 3903161

18696