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Intron Name: Anas_platyrhynchos_platyrhynchos_19_3893679_3894656_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3893679 - 3894656

Intron Length:

978

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGCT

5'SS Class:

strong_major

3'SS Sequence:

CTCGTGTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTGAT

U12 Branch Point Sequence:

TGGCACTGATGT

Flanking Amino Acid:

PQTTVTIADPEVVDGVPPLT

Intron Amino Acid Position:

1007

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

73.2

34.8

Major BPS

71.2

0.53

37.5

Major PPT

75.3

0.57

0.9

68.6

37.3

Minor 5ss

30.5

-2.2

3.8

47.1

48.5

Minor BPS

-0.6

56.35

45.2

Associated Gene:

Gene:

ITGB4

Ensembl Gene ID:

ENSAPLG00000011722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038616

3883119 - 3903644

20526

ENSAPLT00000019403

3883119 - 3903161

20043

ENSAPLT00000012353

3884466 - 3903161

18696