Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3894818_3894987_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3894818 - 3894987

Intron Length:

170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

CTTGCTTTGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTCCAT

U12 Branch Point Sequence:

TCTCCATGGAAT

Flanking Amino Acid:

PPPGKPLGYKVKYWIQGDPE

Intron Amino Acid Position:

1061

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

67.8

43.5

Major BPS

64.7

0.37

1.3

74.7

Major PPT

76.7

0.6

76.5

37.6

Minor 5ss

28.6

-2.5

3.5

37.8

47.1

Minor BPS

47.2

-0.1

1.9

68.21

Associated Gene:

Gene:

ITGB4

Ensembl Gene ID:

ENSAPLG00000011722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012353

3884466 - 3903161

18696

ENSAPLT00000038616

3883119 - 3903644

20526

ENSAPLT00000019403

3883119 - 3903161

20043