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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3895169_3895299_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3895169 - 3895299
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAG
U12 Branch Point Sequence:
AGTAATCTAAGC
Flanking Amino Acid:
DIIHCHTLEDVPSEPGRLAF
Intron Amino Acid Position:
1121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
61.8
0.29
1.5
69.7
35.5
Major PPT
82
0.72
0.8
72.9
37.4
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
42.4
-0.6
2
52.18
38.5

Associated Gene:

Gene:
ITGB4
Ensembl Gene ID:
ENSAPLG00000011722
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038616
3883119 - 3903644
20526
ENSAPLT00000019403
3883119 - 3903161
20043
ENSAPLT00000012353
3884466 - 3903161
18696