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Intron Name: Anas_platyrhynchos_platyrhynchos_19_3896159_3896354_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3896159 - 3896354

Intron Length:

196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGTTAT

5'SS Class:

major

3'SS Sequence:

ACCTCCCCTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTAAT

U12 Branch Point Sequence:

CATTTTCCACCT

Flanking Amino Acid:

LATQPKRPLSIPIIPDVPII

Intron Amino Acid Position:

1228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

74.2

32.2

Major BPS

76.7

0.66

1.2

77.9

34.9

Major PPT

72.6

0.51

0.8

62.4

Minor 5ss

38.6

-1.3

54.7

43.6

Minor BPS

-0.4

61.19

42.9

Associated Gene:

Gene:

ITGB4

Ensembl Gene ID:

ENSAPLG00000011722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038616

3883119 - 3903644

20526

ENSAPLT00000019403

3883119 - 3903161

20043

ENSAPLT00000012353

3884466 - 3903161

18696