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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3897705_3898595_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3897705 - 3898595
Intron Length:
891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGAC
5'SS Class:
major
3'SS Sequence:
TCCTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCCTCTTCCACA
Flanking Amino Acid:
MRSGTPRPQAEHLLNGRVDF
Intron Amino Acid Position:
1339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.9
33.5
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
80.3
0.68
0.7
75.3
26.8
Minor 5ss
23.4
-3.1
3.4
31
43.4
Minor BPS
49.4
-0
2
62.68
44.2

Associated Gene:

Gene:
ITGB4
Ensembl Gene ID:
ENSAPLG00000011722
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012353
3884466 - 3903161
18696