Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3899408_3900399_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3899408 - 3900399

Intron Length:

992

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACAGCTT

5'SS Class:

major

3'SS Sequence:

CGTTCTGCCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCAAAC

U12 Branch Point Sequence:

CCTGCCGTGACA

Flanking Amino Acid:

DGSAGICKYIDSRLPLGIPD

Intron Amino Acid Position:

1452

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

66.9

44.1

Major BPS

-0.1

50.5

30.4

Major PPT

72.2

0.5

0.9

69.1

Minor 5ss

-1.7

3.8

55.9

48.3

Minor BPS

-0

2.2

61.55

45.2

Associated Gene:

Gene:

ITGB4

Ensembl Gene ID:

ENSAPLG00000011722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038616

3883119 - 3903644

20526

ENSAPLT00000019403

3883119 - 3903161

20043

ENSAPLT00000012353

3884466 - 3903161

18696