About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3901412_3901673_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3901412 - 3901673
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ACCTTCTGACCC
Flanking Amino Acid:
DPQSPLSPVPGSPFTLSTPS
Intron Amino Acid Position:
1565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
69.8
0.45
0.9
62.5
34.6
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
48.7
-0.1
1.7
56.6
42.3

Associated Gene:

Gene:
ITGB4
Ensembl Gene ID:
ENSAPLG00000011722
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012353
3884466 - 3903161
18696
ENSAPLT00000038616
3883119 - 3903644
20526
ENSAPLT00000019403
3883119 - 3903161
20043